PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014153.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 117aa    MW: 12416.9 Da    PI: 6.5098
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014153.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.7e-1180107330
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
         HLH   3 rahnerErrRRdriNsafeeLrellPka 30 
                 ++h+e+ErrRR+riN  +++Lr+++P +
  Do014153.1  80 KSHSEAERRRRERINAHLATLRTMVPCP 107
                 58************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-870108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.8877117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-880107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-981107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MGSVPFSDAG LLDGFYGGFG FGGGHGYDDY GVGQPRASTS PVLLDGGTEE VDGAAASAEL  60
MEAPKRKGDH RAEKAAMALK SHSEAERRRR ERINAHLATL RTMVPCPDKV SVCFSFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0027452e-45AP002745.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0489G09.
GenBankAP0028612e-45AP002861.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0665D10.
GenBankAP0149572e-45AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-45CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673531.17e-32PREDICTED: transcription factor bHLH106-like isoform X2
TrEMBLK7UU023e-32K7UU02_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G016039_P012e-31(Zea mays)
STRINGGRMZM2G166642_P012e-31(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2099967